usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 22.7924210526316 -2.24663157894737 21.1467894736842 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1234 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 806 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 806 Number of spheres polar: 213, nonpolar: 369, out of current total: 806 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.15833 32.45541 -12.22114 7.73395 11.15166 31.10665 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 462 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 418 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 404 Spheres center of coords (x y z): 21.5553822029703 -5.0162979950495 18.6622926980198 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.59467989034706 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 19