usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): -1.503125 19.0724583333333 -28.5560416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1454 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 856 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 856 Number of spheres polar: 251, nonpolar: 338, out of current total: 856 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.22454 8.45506 9.09700 29.05220 -38.55449 -18.59741 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 322 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 267 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 258 Spheres center of coords (x y z): -1.80817558139535 16.2385553875969 -27.0367005426357 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.32820471994242 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 24