usefragsph not on
There are 17 ligand heavy atoms
Ligand center of coords (x y z): 3.38635294117647 2.51217647058824 -29.4675294117647
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1478
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 979
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 979
Number of spheres polar: 382, nonpolar: 468, out of current total: 979
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.46259 13.36160 -7.40913 12.48758 -39.25773 -19.48800
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 456
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 394
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 388
Spheres center of coords (x y z): 6.52093298969072 2.96029845360825 -29.1453470876289
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.65077692670191
Final number of output spheres is: 60
Number of polar spheres: 29
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 17