usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -21.1485185185185 13.0784074074074 -64.3155555555555 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1514 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 949 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 906 Number of spheres polar: 357, nonpolar: 290, out of current total: 906 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -31.11158 -11.23172 5.97415 22.42200 -74.26904 -54.37778 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 536 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 455 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 455 Spheres center of coords (x y z): -21.9924263736264 15.0069924175824 -62.8468373406594 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.16454551373274 Final number of output spheres is: 60 Number of polar spheres: 45 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 27