usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -7.573 -3.0871 -17.8632 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1133 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 764 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 763 Number of spheres polar: 332, nonpolar: 283, out of current total: 763 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.51538 2.06971 -13.07180 2.18731 -27.63869 -7.98766 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 385 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 333 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 325 Spheres center of coords (x y z): -9.04787316923077 -6.06601486153846 -19.7960424615384 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.73699515657599 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 10