usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 0.0183793103448275 0.148413793103448 17.4036896551724 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 818 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 518 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 512 Number of spheres polar: 156, nonpolar: 216, out of current total: 512 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.77696 10.00222 -9.35267 10.12896 7.64683 27.38960 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 318 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 285 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 269 Spheres center of coords (x y z): -0.0297079182156135 1.72987524163569 16.9048740892193 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.21631324654428 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 29