usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): -0.0914117647058822 1.21161764705882 16.6818823529412 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1033 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 506 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 506 Number of spheres polar: 160, nonpolar: 214, out of current total: 506 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.81092 9.81694 -8.17315 11.07900 6.69773 26.61403 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 290 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 269 Spheres center of coords (x y z): -0.546334126394052 2.8607201858736 15.7708866542751 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.47022655172082 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 34