usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 0.252068965517241 0.220448275862069 17.2563103448276 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 789 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 516 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 509 Number of spheres polar: 170, nonpolar: 216, out of current total: 509 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.47779 10.20444 -9.71113 10.20150 7.27567 27.24129 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 325 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 274 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 261 Spheres center of coords (x y z): -0.081238122605364 1.7773462835249 16.618594559387 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.00973130527998 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 29