usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 0.148571428571429 0.184214285714286 17.0199642857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 894 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 527 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 522 Number of spheres polar: 173, nonpolar: 208, out of current total: 522 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.51117 9.90233 -9.79012 9.98300 7.08228 26.95429 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 323 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 295 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 280 Spheres center of coords (x y z): 0.0429523928571438 1.68754103571429 16.0572329642857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.25730473201002 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 28