usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 57.6823076923077 26.6745384615385 44.0156923076923 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1282 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 716 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 716 Number of spheres polar: 347, nonpolar: 333, out of current total: 716 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 47.70443 67.64249 16.68730 36.66695 34.35968 53.16509 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 168 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 128 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 31 Final number of output spheres is: 31 Number of polar spheres: 21 Number of nonpolar spheres: 8 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 13