usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 0.210357142857143 0.00460714285714284 17.6302857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 897 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 587 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 583 Number of spheres polar: 158, nonpolar: 265, out of current total: 583 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.61905 10.05634 -9.98880 9.89159 7.73430 27.62304 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 221 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 180 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 0.041616217948718 1.14599096153846 15.8650263461539 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08311183893556 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 28