usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 7.53125925925926 32.6698518518519 -0.735111111111111 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1560 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 884 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 884 Number of spheres polar: 236, nonpolar: 339, out of current total: 884 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.33183 17.52523 22.67379 42.62551 -10.73216 9.07099 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 512 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 446 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 437 Spheres center of coords (x y z): 7.7504299313501 29.7921144851259 -1.86268663615561 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.43180762102466 Final number of output spheres is: 60 Number of polar spheres: 41 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 27