usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 21.331 28.2951 51.589 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 735 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 364 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 364 Number of spheres polar: 207, nonpolar: 142, out of current total: 364 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.48644 30.97896 18.31141 38.20153 41.60306 59.70887 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 103 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 76 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 35 Final number of output spheres is: 35 Number of polar spheres: 22 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 10