usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -2.1738 -3.0507 20.5687 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 826 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 386 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 386 Number of spheres polar: 230, nonpolar: 148, out of current total: 386 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.15954 7.77332 -13.04705 6.87402 16.55611 28.69020 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 177 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 140 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 65 Spheres center of coords (x y z): -2.55937446153846 -1.39713984615385 22.0252776923077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.53092696566645 Final number of output spheres is: 60 Number of polar spheres: 35 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 10