usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -16.5145714285714 57.0128095238095 49.1116666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1215 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 509 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 504 Number of spheres polar: 264, nonpolar: 205, out of current total: 504 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -26.49243 -6.66289 47.13100 65.75884 39.16579 59.10104 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 149 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 114 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 40 Final number of output spheres is: 40 Number of polar spheres: 23 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 21