usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 22.5007 -2.6099 11.1307 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 996 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 537 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 537 Number of spheres polar: 276, nonpolar: 248, out of current total: 537 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.20125 32.42863 -12.57322 7.22052 1.17267 21.10281 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 153 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 115 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 49 Spheres center of coords (x y z): 22.7429034693878 0.257989183673469 13.9705426530612 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.42053367433756 Final number of output spheres is: 45 Number of polar spheres: 35 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 10