usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 23.03 -1.13309523809524 12.7957619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1352 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 766 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 766 Number of spheres polar: 308, nonpolar: 396, out of current total: 766 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.25300 32.93710 -11.12352 8.60244 2.79640 22.77668 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 362 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 302 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 247 Spheres center of coords (x y z): 24.3617350202429 -3.4467847368421 17.1370565587045 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.81878901356119 Final number of output spheres is: 60 Number of polar spheres: 47 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 21