usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -7.98771428571429 15.012619047619 19.9979047619048 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1235 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 612 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 612 Number of spheres polar: 312, nonpolar: 264, out of current total: 612 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.96300 1.38889 5.50638 25.00787 10.15546 29.97384 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 240 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 180 Spheres center of coords (x y z): -9.00135138888889 12.397674 24.4914895 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.57218415701463 Final number of output spheres is: 60 Number of polar spheres: 41 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 21