usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -7.66085 14.62215 19.7517 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1216 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 626 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 626 Number of spheres polar: 343, nonpolar: 247, out of current total: 626 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.08322 1.91335 4.90047 24.60449 9.77968 29.74354 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 302 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 225 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 170 Spheres center of coords (x y z): -8.77211688235294 12.0143915294118 24.3256264705882 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.57143029438949 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 20