usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -7.31416666666667 14.7526666666667 19.7361666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1063 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 555 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 555 Number of spheres polar: 282, nonpolar: 246, out of current total: 555 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.30976 2.67947 4.86525 24.73279 9.77671 29.69739 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 265 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 216 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 165 Spheres center of coords (x y z): -9.11457909090909 11.860764 24.3572911515151 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.53342829509531 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 18