usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): -7.66894736842105 14.9186842105263 19.9383684210526 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1352 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 692 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 692 Number of spheres polar: 351, nonpolar: 310, out of current total: 692 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.63528 2.31677 5.06784 24.90110 10.02683 29.93695 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 172 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 139 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 102 Spheres center of coords (x y z): -9.63384049019608 11.5354251960784 24.7178503921569 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.00661967254942 Final number of output spheres is: 45 Number of polar spheres: 27 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 19