usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 7.77785 -15.06305 20.40635 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1177 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 622 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 622 Number of spheres polar: 313, nonpolar: 275, out of current total: 622 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.14482 17.73097 -25.03857 -5.15823 10.41908 30.39253 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 309 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 244 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 202 Spheres center of coords (x y z): 8.87640198019802 -12.6508874257426 25.104616980198 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.68352190484833 Final number of output spheres is: 60 Number of polar spheres: 36 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 20