Distance from surface specified: 1.80 There are 22 ligand heavy atoms Ligand center of coords (x y z): 66.4291818181818 29.6452272727273 1.3185 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 9982 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 8796 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 8513 Number of spheres polar: 5453, nonpolar: 2130, out of current total: 8513 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 52.43280 80.42000 15.75380 43.64220 -12.67900 15.30440 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 957 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 461 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 435 Spheres center of coords (x y z): 71.8246464367816 33.253872183908 0.842113563218389 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.9411410745803 Final number of output spheres is: 200 Number of polar spheres: 123 Number of nonpolar spheres: 62 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 22