usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 61.3322727272727 73.6485 11.759 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1250 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 915 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 908 Number of spheres polar: 224, nonpolar: 483, out of current total: 908 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 51.38685 71.24675 63.73031 83.55931 1.80565 21.73167 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 451 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 387 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 376 Spheres center of coords (x y z): 62.2906789361702 72.2503075797873 14.1319421276596 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99509893198863 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 22