usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 14.2512903225806 66.3271290322581 70.2364838709677 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2197 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1381 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1378 Number of spheres polar: 293, nonpolar: 799, out of current total: 1378 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.31807 24.20854 56.36869 76.27872 60.30156 80.22973 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 401 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 349 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 13.6619999117647 68.1912783235294 71.5563636470589 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.36743487542897 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 31