usefragsph not on There are 46 ligand heavy atoms Ligand center of coords (x y z): 16.310847826087 5.62773913043478 50.3308043478261 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2745 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1197 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1196 Number of spheres polar: 449, nonpolar: 486, out of current total: 1196 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.77739 25.98432 -4.36839 15.60013 40.37033 60.32454 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 391 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 315 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 46 Spheres center of coords (x y z): 16.310847826087 5.62773913043478 50.3308043478261 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.41678848808022 WARNING: removing a crystallographic sphere since 46>45 max spheres are present Final number of output spheres is: 45 Number of polar spheres: 3 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 45