usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 40.2428181818182 -1.74809090909091 7.5845 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1278 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 879 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 869 Number of spheres polar: 230, nonpolar: 459, out of current total: 869 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.27296 50.24125 -11.73375 7.72311 -2.38551 17.58274 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 278 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 201 Spheres center of coords (x y z): 38.9797387064677 -1.07293810945274 9.11682721393035 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.38875816987143 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 22