usefragsph not on
There are 22 ligand heavy atoms
Ligand center of coords (x y z): 40.2428181818182 -1.74809090909091 7.5845
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1278
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 879
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 869
Number of spheres polar: 230, nonpolar: 459, out of current total: 869
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.27296 50.24125 -11.73375 7.72311 -2.38551 17.58274
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 433
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 372
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 326
Spheres center of coords (x y z): 38.9461960122699 -1.44319607361963 9.23861978527607
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.48263225924539
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 44
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 22