usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 21.4465454545455 31.3976818181818 19.3854090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2019 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1194 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1194 Number of spheres polar: 464, nonpolar: 549, out of current total: 1194 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.45245 31.44473 21.50012 40.85598 9.47640 29.38216 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 341 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 283 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 228 Spheres center of coords (x y z): 20.0505164912281 33.2635695175438 19.7256912719298 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.03041918846232 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 22