Distance from surface specified: 1.80 There are 21 ligand heavy atoms Ligand center of coords (x y z): -25.8841904761905 29.9649523809524 -40.7839523809524 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 9319 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 8695 WARNING: removing a crystallographic sphere that is distance 1.46809536474985 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 8694 Number of spheres polar: 4146, nonpolar: 3389, out of current total: 8694 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -39.88060 -12.54700 16.85780 42.92040 -54.77720 -26.78420 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1030 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 628 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 599 Spheres center of coords (x y z): -24.3470220367279 31.8707041736227 -42.5588066777963 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.50441437609 Final number of output spheres is: 200 Number of polar spheres: 108 Number of nonpolar spheres: 79 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 20