There are 21 ligand heavy atoms Ligand center of coords (x y z): -25.8841904761905 29.9649523809524 -40.7839523809524 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 9319 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 7708 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 7708 Number of spheres polar: 3654, nonpolar: 2999, out of current total: 7708 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -37.86240 -13.90560 17.97780 41.95020 -52.78180 -28.83680 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 820 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 562 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 551 Spheres center of coords (x y z): -24.2999255898367 32.166413430127 -41.7399114337568 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.92337344919592 Final number of output spheres is: 120 Number of polar spheres: 71 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 21