usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -17.7329 29.51215 66.52695 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 712 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 383 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 377 Number of spheres polar: 134, nonpolar: 132, out of current total: 377 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -27.62869 -7.98163 19.59917 39.47534 56.60349 72.28992 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 171 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 141 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 131 Spheres center of coords (x y z): -17.9348916793893 28.7143680916031 66.1382942748092 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.79696726193035 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 20