usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -17.7329 29.51215 66.52695 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 712 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 383 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 377 Number of spheres polar: 134, nonpolar: 132, out of current total: 377 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -27.62869 -7.98163 19.59917 39.47534 56.60349 72.28992 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 227 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 207 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): -17.3900925789474 28.5677316842105 66.2747760526316 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.09905138728977 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 20