usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 11.2148695652174 -44.7350869565217 -0.230434782608696 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 701 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 535 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 531 Number of spheres polar: 141, nonpolar: 271, out of current total: 531 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.36607 21.20152 -52.47380 -34.86576 -10.00788 9.72317 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 171 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 139 Spheres center of coords (x y z): 10.804435323741 -46.0771332374101 -0.117664100719424 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.99820935941806 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 23