usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 10.1530416666667 -27.0006666666667 -10.16825 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1453 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 927 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 912 Number of spheres polar: 208, nonpolar: 502, out of current total: 912 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.15608 20.14682 -36.95691 -17.03817 -20.16317 -0.20513 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 300 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 236 Spheres center of coords (x y z): 9.40548279661017 -27.396363940678 -13.5719965677966 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.74606935070134 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 24