usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 4.81656 -23.14236 10.41588 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1143 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 627 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 626 Number of spheres polar: 164, nonpolar: 292, out of current total: 626 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.02005 14.34984 -33.11329 -13.17285 0.59613 20.27139 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 216 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 185 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 1.43764142857143 -24.5412381168831 10.3774672727273 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.82726188550578 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 25