usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 9.18983333333333 -26.810875 -11.0865 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1287 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 800 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 776 Number of spheres polar: 165, nonpolar: 420, out of current total: 776 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.78243 19.16438 -36.79790 -16.87762 -21.06776 -1.18218 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 451 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 398 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 8.82839261764705 -26.1051354117647 -12.5774098235294 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.04779363927163 Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 49 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 24