usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 10.2031923076923 -25.5576153846154 -10.1973076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1270 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 791 Number of spheres polar: 167, nonpolar: 424, out of current total: 791 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.21103 20.08716 -35.53741 -15.62808 -20.18609 -0.33560 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 440 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 375 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 347 Spheres center of coords (x y z): 9.79441711815562 -25.5508511815562 -12.829822334294 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.04666644585134 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 26