usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 10.1530416666667 -27.0006666666667 -10.16825 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1476 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 897 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 882 Number of spheres polar: 137, nonpolar: 528, out of current total: 882 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.16765 20.10679 -36.99290 -17.07302 -20.14857 -0.32796 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 467 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 407 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 378 Spheres center of coords (x y z): 9.09416917989419 -27.1964095767196 -13.0860841534392 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.22615035378474 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 24