usefragsph not on There are 46 ligand heavy atoms Ligand center of coords (x y z): 13.178652173913 22.9214782608696 5.55165217391304 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1377 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 975 WARNING: removing a crystallographic sphere that is distance 30.5880897409433 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.5292040229601 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.4056527558903 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.7200150080861 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.3140927808044 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.5206429794073 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.4847295845963 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.3100457435166 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.6993892439509 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.5844189071046 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.6571893185117 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.2784841308426 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.0463924766317 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.9725703522885 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.0005215130004 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.6040755302374 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.2196151240909 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.6296225915055 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.7416064214549 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.4135784970139 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.2202472909773 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.9785740159864 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.3592692518053 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.5090765414979 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.4734350755226 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.4413770973689 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.2860044898533 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.1307965052732 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.8842491202471 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.8884081654009 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.6617198541888 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.9911212994199 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.5589234368834 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.8036570079532 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.8554314990811 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.6050284908699 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.3688686062733 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.0620824217206 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.5429672849563 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.2940352641378 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.7117290812904 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.0323003872319 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.6375341764211 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.7641063885399 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.7186262184267 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.3054885843718 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0