usefragsph not on There are 50 ligand heavy atoms Ligand center of coords (x y z): 12.97872 22.87324 5.6249 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1223 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 811 WARNING: removing a crystallographic sphere that is distance 31.1221234654707 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.4255075279921 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.8753974668283 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.2635771565952 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 30.622601946928 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.6105926990798 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.734493972099 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.3063378592145 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 30.5792404418422 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.7382980821236 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.957848690131 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.5585203621562 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.5356361367078 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.1132932726873 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.634166415773 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.6417409184009 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.8464807038918 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.7402012035648 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.1702445345855 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.4270320114007 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.4994705376215 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.2313596343915 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.9148980318272 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.9449956296421 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.9600623790765 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.4168295426475 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 24.7222665020827 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.9694221248849 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.272388473562 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.6774924421318 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.8932427121696 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.05578870424 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.8187705875008 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.0367853542449 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.3688372241131 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.054486717814 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.1031813077358 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.8131469805392 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.9475086725096 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.0191784849207 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.3232805463509 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.9818773851934 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.0572734784253 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 29.3102852084384 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.2000512594918 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 25.7354655291098 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 26.196508488728 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 28.4191627251754 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 23.7822705812544 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 27.4064428556498 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0