usefragsph not on
There are 56 ligand heavy atoms
Ligand center of coords (x y z): 12.7759821428571 22.6652142857143 5.77633928571429
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1419
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1002
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1002
Number of spheres polar: 196, nonpolar: 566, out of current total: 1002
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.68500 22.76787 13.03289 31.11520 -4.18736 15.59211
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 525
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 455
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 443
Spheres center of coords (x y z): 12.9580759819413 21.4312618058691 6.81857636568849
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.38805364310086
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 39
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 56