usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): -7.64880952380953 16.9040476190476 24.9022857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1455 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 777 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 777 Number of spheres polar: 134, nonpolar: 445, out of current total: 777 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.54100 2.33436 6.97483 26.87431 14.95301 34.90060 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 479 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 422 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 409 Spheres center of coords (x y z): -7.10489508557458 15.98911799511 26.3882848410758 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.91904357209196 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 42