usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 10.8848222222222 0.480777777777778 7.54191111111111 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1697 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 972 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 972 Number of spheres polar: 210, nonpolar: 530, out of current total: 972 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.90610 20.34815 -9.51678 10.23176 -2.45627 17.52548 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 534 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 467 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 442 Spheres center of coords (x y z): 11.2540675113122 -0.592815882352941 9.71818622171946 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.05154927778534 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 45