usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): -9.47990476190477 16.388 28.0410952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1331 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 703 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 703 Number of spheres polar: 139, nonpolar: 378, out of current total: 703 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.46345 0.48400 6.45376 25.91177 18.04387 38.00526 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 417 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 361 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): -9.71231605882352 15.0520443529412 28.4627234117647 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.30181344149211 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 42