usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 5.33816279069767 -2.32802325581395 14.7629534883721 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1358 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 819 WARNING: removing a crystallographic sphere that is distance 18.1917107221943 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 20.2325983007621 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 10.4548123847346 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 12.7068834101836 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 11.8668010011123 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 12.1707748726201 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 12.4395150227008 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 12.9224450859735 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 13.4126670353066 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 13.8591446345004 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 18.705317158498 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 16.4788850957824 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 19.1755532384336 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 17.0046820023192 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 20.516323111123 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 21.0304454066004 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 20.2808931016363 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 17.0134263157073 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 18.9561295100028 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 15.1491120201812 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 15.9153705580486 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 17.3611414371291 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 14.0934318744584 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 18.3583764260351 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 17.653256640065 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 18.9944080455275 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 17.5315859522178 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 20.0902845674221 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 19.7361944406717 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 14.7392345798552 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 16.050542483044 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 13.0427904222984 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 11.8578870799144 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 19.9655647052619 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 18.6967673676494 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 17.3135965645501 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 13.9791490799691 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 16.8348109582496 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 16.4886343279242 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 21.0869654051976 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 12.7138715189355 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 18.9382050099792 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 12.6131552753465 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0