usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): -8.97015384615385 16.6844358974359 27.1803846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1323 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 730 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 730 Number of spheres polar: 166, nonpolar: 368, out of current total: 730 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.74539 0.99481 6.73900 26.49439 17.28894 37.00708 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 251 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 211 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 195 Spheres center of coords (x y z): -8.80711112820514 15.064760051282 27.9359677948718 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.34814549948583 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 39