usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 20.8072666666667 30.9510444444444 13.8617333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1398 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 863 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 863 Number of spheres polar: 185, nonpolar: 499, out of current total: 863 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.83852 30.70714 21.00779 40.93955 3.90410 23.83886 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 290 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 239 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): 20.1430624537037 31.5782868518519 11.499865787037 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.9683439841776 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 45