usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 22.0927777777778 16.7958222222222 5.45664444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1536 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 996 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 996 Number of spheres polar: 168, nonpolar: 541, out of current total: 996 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.10933 31.84903 6.82947 26.79085 -4.52599 15.42166 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 271 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 258 Spheres center of coords (x y z): 21.1565455426357 17.3191708527132 6.15751868217055 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25660507640277 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 45