usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 19.5922368421053 29.6512894736842 13.8656315789474 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1146 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 717 WARNING: removing a crystallographic sphere that is distance 42.0328857681697 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 43.7310938120692 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 33.7579379405793 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 33.4270816404902 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.8985379206637 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.289221119763 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.7247223922034 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 42.1896836916325 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.1191462895212 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.6900618613117 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.6215132724635 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.4056774260852 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.7116239032403 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.3721273843398 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.4443137677196 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.734656989126 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.4342477296068 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.4503161339924 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.3702952007839 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.4578298973141 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.5227204079871 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.853430201238 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.1179930090253 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 42.2448462300433 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.7285837926631 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.817852297622 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.9211174677118 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.9000461336261 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.4856994999426 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.2716118872836 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.3025100613524 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.5503141491739 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.5854255860401 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.4462176813272 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.0041248140844 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.2154548944387 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.6281090409816 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.8638138792565 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0